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COPASI Tracker – Components for COPASI |
This is the development version of COPASI
| Component | Default Assignee |
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| Build Process | shoops@vbi.vt.edu |
| Problems related to the build process | |
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| Common Options | shoops@vbi.vt.edu |
| This component deals with COPASI wide available options such as environment variables and command line parameters. | |
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| CopasiSE | shoops@vbi.vt.edu |
| command line version of Copasi | |
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| CopasiUI | shoops@vbi.vt.edu |
| Standard GUI for COPASI. | |
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| Documentation | ralph.gauges@bioquant.uni-heidelberg.de |
| The user documentation of COPASI. | |
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| Elementary Flux Modes | shoops@vbi.vt.edu |
| Module for calculating elementary flux modes. | |
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| Events | shoops@vbi.vt.edu |
| Issues related to simulation of discrete events. | |
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| Export | sven.sahle@bioquant.uni-heidelberg.de |
| This component deals with all exports except SBML export. | |
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| Function | shoops@vbi.vt.edu |
| Kinetic and general use functions for reporting and optimization. | |
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| Installation | shoops@vbi.vt.edu |
| Installation Problems | |
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| Language Bindings | ralph.gauges@bioquant.uni-heidelberg.de |
| Issues regarding the language bindings. | |
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| Layout | ralph.gauges@bioquant.uni-heidelberg.de |
| Graphical display of simulation result on top of a 2 dimensional layout of the reaction network. | |
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| Lyapunov Exponent | sven.sahle@bioquant.uni-heidelberg.de |
| This component deals with the task calculating the Lyapunov exponent | |
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| MIRIAM | shoops@vbi.vt.edu |
| This component is for issues relate to the MIRIAM annotation. | |
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| Model | shoops@vbi.vt.edu |
| The biochemical and mathematical model of the sytem. | |
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| Optimization | shoops@vbi.vt.edu |
| Optimization prozedures. | |
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| other | shoops@vbi.vt.edu |
| This includes initial investigation into new features. | |
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| Parameter Estimation | shoops@vbi.vt.edu |
| This component estimates model parameters to best fit experimental. | |
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| Performance Tuning | shoops@vbi.vt.edu |
| This deals with all computational performance related issues. | |
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| Plotting | sven.sahle@bioquant.uni-heidelberg.de |
| This is the plotting library. | |
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| Qt 4 Conversion | shoops@vbi.vt.edu |
| This is the list of issues which need to be handled to complete the conversion from Qt 3 to Qt 4. | |
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| Random Number Generator | shoops@vbi.vt.edu |
| This component implements various random number generators. | |
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| Report | shoops@vbi.vt.edu |
| Module dealing with report creation. | |
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| SBML | ralph.gauges@bioquant.uni-heidelberg.de |
| The SBML component deals with SBML import and export. | |
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| SBW | shoops@vbi.vt.edu |
| SBW related problems. | |
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| Scan | shoops@vbi.vt.edu |
| Module providing multidimensional parameter scan. | |
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| Sensitivities | sven.sahle@bioquant.uni-heidelberg.de |
| This component deals with the calculation of sensitivities in COPASI | |
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| Steady-State | shoops@vbi.vt.edu |
| Module dealing with steady state calculation and analysis. | |
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| Time Scale Separation | sven.sahle@bioquant.uni-heidelberg.de |
| This component deals with time scale separation analysis. | |
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| Trajectory | shoops@vbi.vt.edu |
| Trajectory calculations. | |
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| Utilities | shoops@vbi.vt.edu |
| General utilities for load/save, messaging and exception handling, etc. | |
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| XML | shoops@vbi.vt.edu |
| This component deals with the XML based COPASI file format. | |
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